Ravi Allada Professor, Chair
The Molecular Genetics of Circadian Rhythms and Sleep
Our research is focused on the circadian regulation of sleep behavior using the fruit fly Drosophila and incorporates a variety of approaches including biochemistry, molecular biology, genetics, cell culture, electrophysiology, anatomy, and behavior. Fly genetics has uncovered the molecular logic of circadian clocks. They consist of clock proteins that feed back and control their own transcription. Remarkably, highly conserved clocks exist in humans. We are interested in how these molecular networks develop. How does phosphorylation set the speed of the clock? How do these feedback loops influence neuronal activity and output?
Astonishingly, fruit flies exhibit periods of inactivity with many of the cardinal features of mammalian sleep, including homeostatic control and similar responses to drugs such as caffeine. We have identified a fly sleep center in a region of the brain also important in long-term memory known as the mushroom bodies (MB). We are interested in understanding how the circadian clock and sleep loss influence the MB, how the MB influence sleep, and what are the links between sleep and learning? Studies in the fly raise the possibility of understanding the elusive function of sleep at the molecular level.
Neurodegeneration and the Circadian Clock
Disruption of daily rhythms has wide-ranging health consequences. We have begun to explore the links between the circadian clock and neurodegeneration. Human neurodegenerative disease such as Alzheimer’s, ALS, and Huntington’s disease frequently involves symptoms of circadian disruption. Remarkably, normalization of circadian rhythms and sleep cycles can stave off the progression of disease. We are using fruit fly models of human neurodegenerative disease to test the hypothesis that normal circadian function can protect against neurodegenerative decline, and to discover the genetic bases of these links in hopes of providing novel pharmaceutical targets and protective strategies.
Undergraduates interested in research experience in the Allada lab may contact Dr. Bart van Alphen.
- Seluzicki A, Flouraskis M, Kula-Eversole E, Zhang L, Kilman V, Allada R. (2014) Dual PDF signaling pathways reset clocks via TIMELESS and acutely excite target neurons to control circadian behavior. PLoS Biology, 12(3):e1001810. doi: 10.1371/journal.pbio.1001810.
- Lim C and Allada R. (2013) ATAXIN-2 activates PERIOD translation to sustain circadian rhythms in Drosophila. Science, 340(6134):875-9. doi:10.1126/science.1234785.
- Pfeiffenberger C, Allada R. (2012) Cul3 and the BTB Adaptor Insomniac Are Key Regulators of Sleep Homeostasis and a Dopamine Arousal Pathway in Drosophila. PLoS Genetics, 8(10):e1003003.
- Lim C, Lee J, Choi C, Kilman VL, Kim J, Park SM, Jang SK, Allada R* and Choe J* (*co-corresponding authors; 2011). The novel gene twenty-four defines a critical translational step in the Drosophila clock. Nature, 470(7334):399-403. PMCID: PMC3073513
- Zhang L, Chung BY, Lear BC, Kilman VL, Liu Y, Mahesh G, Meissner RA, Hardin PE, Allada R. (2010). DN1(p) circadian neurons coordinate acute light and PDF inputs to produce robust daily behavior in Drosophila. Curr Biol, 20(7): R322-324.
- 2008 Distinguished Service Award, Society for Research on Biological Rhythms
- 2003-05 National Alliance for Research on Schizophrenia and Depression Young Investigator Award
- 1990-03 Burroughs Wellcome Career Award in the Biomedical Sciences